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1

Reconstructing Denisovan Anatomy Using DNA Methylation Maps

Gokhman, David, Mishol, Nadav, de Manuel, Marc, de Juan, David, Shuqrun, Jonathan, Meshorer, Eran, Marques-Bonet, Tomas, Rak, Yoel, Carmel, Liran

Journal:

Year:

2019

Language:

english

File:

PDF, 4.08 MB

english, 2019

2

Drawing Huge Graphs by Algebraic Multigrid Optimization

Koren, Yehuda, Carmel, Liran, Harel, David

Journal:

Multiscale Modeling and Simulation

Year:

2003

Language:

english

File:

PDF, 1.03 MB

english, 2003

3

Predicting the Receptive Range of Olfactory Receptors

Haddad, Rafi, Carmel, Liran, Sobel, Noam, Harel, David

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 334 KB

english, 2008

4

Estimating the Size of the Olfactory Repertoire

Liran Carmel, David Harel, Doron Lancet

Journal:

Bulletin of Mathematical Biology

Year:

2001

Language:

english

File:

PDF, 239 KB

english, 2001

5

Electronic nose signal restoration—beyond the dynamic range limit

Journal:

Sensors and Actuators B: Chemical

Year:

2005

Language:

english

File:

PDF, 224 KB

english, 2005

6

On predicting responses to mixtures in quartz microbalance sensors

Liran Carmel, Noa Sever, David Harel

Journal:

Sensors and Actuators B: Chemical

Year:

2005

Language:

english

File:

PDF, 224 KB

english, 2005

7

On mappings between electronic noses

Oded Shaham, Liran Carmel, David Harel

Journal:

Sensors and Actuators B: Chemical

Year:

2005

Language:

english

File:

PDF, 170 KB

english, 2005

8

Mix-to-mimic odor synthesis for electronic noses

Liran Carmel, David Harel

Journal:

Sensors and Actuators B: Chemical

Year:

2007

Language:

english

File:

PDF, 839 KB

english, 2007

9

XX Ovarian Dysgenesis Is Caused by a PSMC3IP/HOP2 Mutation that Abolishes Coactivation of Estrogen-Driven Transcription

David Zangen, Yotam Kaufman, Sharon Zeligson, Shira Perlberg, Hila Fridman, Moein Kanaan, Maha Abdulhadi-Atwan, Abdulsalam Abu Libdeh, Ayal Gussow, Irit Kisslov, Liran Carmel, Paul Renbaum, Ephrat Lev

Journal:

The American Journal of Human Genetics

Year:

2011

Language:

english

File:

PDF, 720 KB

english, 2011

10

Patterns of intron gain and conservation in eukaryotic genes

Liran Carmel, Igor B Rogozin, Yuri I Wolf, Eugene V Koonin

Journal:

BMC Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 451 KB

english, 2007

11

The Function of Introns

Chorev, Michal, Carmel, Liran

Journal:

Frontiers in Genetics

Year:

2012

Language:

english

File:

PDF, 1.30 MB

english, 2012

12

Potency and Fate Specification in CNS Stem Cell Populations In Vitro

Rea Ravin, Daniel J. Hoeppner, David M. Munno, Liran Carmel, Jim Sullivan, David L. Levitt, Jennifer L. Miller, Christopher Athaide, David M. Panchision, Ronald D.G. McKay

Journal:

Year:

2008

Language:

english

File:

PDF, 1.59 MB

english, 2008

13

Endothelial cells promote migration and proliferation of enteric neural crest cells via β1 integrin signaling

Nandor Nagy, Olive Mwizerwa, Karina Yaniv, Liran Carmel, Rafael Pieretti-Vanmarcke, Brant M. Weinstein, Allan M. Goldstein

Journal:

Developmental Biology

Year:

2009

Language:

english

File:

PDF, 1.17 MB

english, 2009

14

Homoplasy in genome-wide analysis of rare amino acid replacements: the molecular-evolutionary basis for Vavilov's law of homologous series

Igor B Rogozin, Karen Thomson, Miklós Csürös, Liran Carmel, Eugene V Koonin

Journal:

Year:

2008

Language:

english

File:

PDF, 796 KB

english, 2008

15

Origin and evolution of spliceosomal introns

Igor B Rogozin, Liran Carmel, Miklos Csuros, Eugene V Koonin

Journal:

Year:

2012

Language:

english

File:

PDF, 612 KB

english, 2012

16

Unifying Measures of Gene Function and Evolution

Yuri I. Wolf, Liran Carmel and Eugene V. Koonin

Journal:

Proceedings Biological Sciences

Year:

2006

Language:

english

File:

PDF, 1.62 MB

english, 2006

17

Dependencies among Editing Sites in Serotonin 2C Receptor mRNA

Carmel, Liran, Koonin, Eugene V., Dracheva, Stella, Markel, Scott

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.10 MB

english, 2012

18

Gene expression profile of empirically delineated classes of unexplained chronic fatigue

Carmel, Liran, Efroni, Sol, White, Peter D, Aslakson, Eric, Vollmer-Conna, Ute, Rajeevan, Mangalathu S

Journal:

Pharmacogenomics

Year:

2006

Language:

english

File:

PDF, 264 KB

english, 2006

19

Epigenetics: It's Getting Old. Past Meets Future in Paleoepigenetics

Gokhman, David, Meshorer, Eran, Carmel, Liran

Journal:

Trends in Ecology & Evolution

Year:

2016

Language:

english

File:

PDF, 1.63 MB

english, 2016

20

System-wide Analysis of the T Cell Response

Covacu, Ruxandra, Philip, Hagit, Jaronen, Merja, Almeida, Jorge, Kenison, Jessica E., Darko, Samuel, Chao, Chun-Cheih, Yaari, Gur, Louzoun, Yoram, Carmel, Liran, Douek, Daniel C., Efroni, Sol, Quintan

Journal:

Year:

2016

Language:

english

File:

PDF, 3.89 MB

english, 2016

21

JuncDB: an exon–exon junction database

Chorev, Michal, Guy, Lotem, Carmel, Liran

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 4.97 MB

english, 2016

22

Expanding the phenotype of CRB2 mutations - A new ciliopathy syndrome?

Jaron, Ranit, Rosenfeld, Nuphar, Zahdeh, Fouad, Carmi, Shai, Beni-Adani, Liana, Doviner, Victoria, Picard, Elie, Segel, Reeval, Zeligson, Sharon, Carmel, Liran, Renbaum, Paul, Levy-Lahad, Ephrat

Journal:

Clinical Genetics

Year:

2016

Language:

english

File:

PDF, 463 KB

english, 2016

23

Movement correlates of lizards’ dorsal pigmentation patterns

Halperin, Topaz, Carmel, Liran, Hawlena, Dror

Journal:

Functional Ecology

Year:

2016

Language:

english

File:

PDF, 321 KB

english, 2016

24

The dual effect of a ferredoxin-hydrogenase fusion protein in vivo: successful divergence of the photosynthetic electron flux towards hydrogen production and elevated oxygen tolerance

Eilenberg, Haviva, Weiner, Iddo, Ben-Zvi, Oren, Pundak, Carmel, Marmari, Abigail, Liran, Oded, Wecker, Matt S., Milrad, Yuval, Yacoby, Iftach

Journal:

Biotechnology for Biofuels

Year:

2016

Language:

english

File:

PDF, 1.68 MB

english, 2016

25

Archaic adaptive introgression in TBX15/WARS2

Racimo, Fernando, Gokhman, David, Fumagalli, Matteo, Ko, Amy, Hansen, Torben, Moltke, Ida, Albrechtsen, Anders, Carmel, Liran, Huerta-Sánchez, Emilia, Nielsen, Rasmus

Journal:

Molecular Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 1.40 MB

english, 2016

26

Gene ORGANizer: linking genes to the organs they affect

Gokhman, David, Kelman, Guy, Amartely, Adir, Gershon, Guy, Tsur, Shira, Carmel, Liran

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.31 MB

english, 2017

27

The role of nucleotide composition in premature termination codon recognition

Fouad Zahdeh,Liran Carmel

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

28

Subjective well-being of visually impaired older adults living in the community

Rafaely, Liran, Carmel, Sara, Bachner, Yaacov G.

Journal:

Aging & Mental Health

Year:

2017

Language:

english

File:

PDF, 516 KB

english, 2017

29

Identification of introns harboring functional sequence elements through positional conservation

Chorev, Michal, Joseph Bekker, Alan, Goldberger, Jacob, Carmel, Liran

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.15 MB

english, 2017

30

Inferring Past Environments from Ancient Epigenomes

Gokhman, David, Malul, Anat, Carmel, Liran

Journal:

Molecular Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 1.37 MB

english, 2017

31

Evidence for convergent evolution of SINE-directed Staufen-mediated mRNA decay

Lucas, Bronwyn A., Lavi, Eitan, Shiue, Lily, Cho, Hana, Katzman, Sol, Miyoshi, Keita, Siomi, Mikiko C., Carmel, Liran, Ares, Manuel, Maquat, Lynne E.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.24 MB

english, 2018

32

[IEEE 2017 IEEE 27th International Workshop on Machine Learning for Signal Processing (MLSP) - Tokyo (2017.9.25-2017.9.28)] 2017 IEEE 27th International Workshop on Machine Learning for Signal Processing (MLSP) - A deep neural network witharestricted noisy channel for identification of functional introns

Bekker, Alan Joseph, Chorev, Michal, Carmel, Liran, Goldberger, Jacob

Year:

2017

Language:

english

File:

PDF, 113 KB

english, 2017

33

Alu exaptation enriches the human transcriptome by introducing new gene ends

Lavi, Eitan, Carmel, Liran

Journal:

Year:

2018

Language:

english

File:

PDF, 2.85 MB

english, 2018

34

De Novo Origin of Protein-Coding Genes in Murine Rodents

Murphy, Daniel N., McLysaght, Aoife, Carmel, Liran

Journal:

Year:

2012

Language:

english

File:

PDF, 466 KB

english, 2012

35

The Impact of Gene Duplication, Insertion, Deletion, Lateral Gene Transfer and Sequencing Error on Orthology Inference: A Simulation Study

Dalquen, Daniel A., Altenhoff, Adrian M., Gonnet, Gaston H., Dessimoz, Christophe, Carmel, Liran

Journal:

Year:

2013

Language:

english

File:

PDF, 1.72 MB

english, 2013

36

Small RNA sequences derived from pre-microRNAs in the supraspliceosome

Mahlab-Aviv, Shelly, Boulos, Ayub, Peretz, Ayelet R, Eliyahu, Tsiona, Carmel, Liran, Sperling, Ruth, Linial, Michal

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 3.16 MB

english, 2018

37

Assessing predictions of the impact of variants on splicing in CAGI5

Mount, Stephen M., Avsec, Žiga, Carmel, Liran, Casadio, Rita, Çelik, Muhammed Hasan, Chen, Ken, Cheng, Jun, Cohen, Noa E., Fairbrother, William G, Fenesh, Tzila, Gagneur, Julien, Gotea, Valer, Holzer,

Journal:

Year:

2019

Language:

english

File:

PDF, 341 KB

english, 2019

38

Assessing predictions of the impact of variants on splicing in CAGI5

Mount, Stephen M., Avsec, Žiga, Carmel, Liran, Casadio, Rita, Çelik, Muhammed Hasan, Chen, Ken, Cheng, Jun, Cohen, Noa E., Fairbrother, William G, Fenesh, Tzila, Gagneur, Julien, Gotea, Valer, Holzer,

Journal:

Year:

2019

File:

PDF, 341 KB

2019

39

Nucleotide composition affects codon usage toward the 3'-end

Zahdeh, Fouad, Carmel, Liran, Tuller, Tamir

Journal:

Year:

2019

File:

PDF, 4.78 MB

2019

40

Predicted Archaic 3D Genome Organization Reveals Genes Related to Head and Spinal Cord Separating Modern from Archaic Humans

Batyrev, Daniel, Lapid, Elisheva, Carmel, Liran, Meshorer, Eran

Journal:

Year:

2019

File:

PDF, 1.30 MB

2019

41

Harnessing epigenetics to study human evolution

Mathov, Yoav, Batyrev, Daniel, Meshorer, Eran, Carmel, Liran

Journal:

Current Opinion in Genetics & Development

Year:

2020

File:

PDF, 745 KB

2020